Peri/Postnatal Epigenetic Twins Study (PETS)
- Project status: Active
Research area: Infection, Immunity and Global Health > Molecular Immunity
PETS is a study of twins, from when they were in the womb through to childhood and beyond.
We aim to work out what makes us all who we are; our health, development, and wellbeing.
We aim to work out what makes us all who we are; our health, development, and wellbeing.
Overview
PETS is a research project being conducted by the Murdoch Children's Research Institute at The Royal Children's Hospital, Melbourne.
PETS is a study of twins, from when they were in the womb through to childhood and beyond. We aim to work out what makes us all who we are; our health, development, and wellbeing. We have started our research with twins, who share the same mother, but are usually in their own 'sac' during pregnancy, then share the same home environment as children. Despite this, even 'identical' twins can have different personalities, physical characteristics and illnesses. We want to know why these differences exist and what they can tell us about the first years of life.
It would be of great value to us if you have any suggestions or comments you would like to make about our research and what research questions interests you. Your comments could even inspire us to research something we hadn’t previously thought of.
There were 250 mothers of twin pairs who were recruited before their twins were born. Of these, 221 families agreed to take part again as their twin children reached six years of age. This is a remarkable 88% and a credit to all our families for the time and effort that is put into this research. Besides this, we also had some families who could not take part in this phase of the study because of work and family commitments, but who would like to continue in the study. We look forward to being able to discover more about the health and development of twins in these families in the future.
We are thrilled to report that over 90% of our participating families completed all three questionnaires about their twins’ health and development, dietary habits and preferences, their oral health and their families. Again, the time and effort that goes into responding to these questionnaires is very much appreciated. The information you can provide helps us to know more about twins, their families and to better understand any findings in the biological samples you provide. It also assists us in tracking the children from birth.
More resources
- Twins Research Australia
- Essays on health: microbes aren’t the enemy, they’re a big part of who we are
- Fat or thin: can the bacteria in our gut affect our eating habits and weight?
- Breastfeeding and Growth of Children in the Peri/postnatal Epigenetic Twins Study (PETS): Theoretical Epigenetic Mechanisms
Information for participants
Access to birth records
We are currently contacting all our families to ask whether we can access the hospital records about the birth of the twins. Some of you will have already received this request.
We hope to collect information from these records from as many families as possible. This is because, since you were recruited to the project, our understanding of how early life can predict future health and disease has improved.
It is now clear that we could gain a much better insight if we could clarify some of the information collected from you during your pregnancy and the delivery of your twins.
To ensure the information collected is accurate, we would like to access the pregnancy and birth medical records for you and your twins. Sometimes, we will seek to confirm information already collected from you through questionnaires. In others, we will seek information about new factors that we did not ask previously that are related to those we have already collected. An example of how this information could be used is to learn more about:
- developmental anomalies of the teeth
- the relationship between genes, the environment in the womb, and tooth decay
- whether there are early predictors of autism
- the relationship between growth in the womb and later body weight
- the relationship between growth in infancy and blood pressure at age six.
And as with all our previous study waves, your consent is optional.
Research team
Principal Investigators
- A/Prof. Jeff Craig
- Prof. Richard Saffery
Associate researchers
- A/Prof. Marc Seal
- A/Prof. Tim Silk
- Dr. Alice Burnett
- Dr. Katrina Scurrah
- A/Prof. Christiane Theda
Project staff
- Dr. Jane Loke
- Dr. Pamela Leong
- Dr. Elisha Josev
- Ms. Kristal Lau
- Ms. Alicia Clifton
- Ms. Lada Staskova
- Ms. Anna Czajko
- Mr. Declan Bourke
- Mr. Matt Bisset
- Ms. Dinisha Parmar
Research postdoc
- Dr. Mihiri Silva
Research students
- Ms. Deborah Ashley (PhD candidate)
- Ms. Taylor King (MD candidate)
Our research
Brain development study in twins
Brain development and thinking skills begin before birth and maturation occurs mainly between the ages of 7 to 11. Both genetics and environment influence it. With the data that we have collected during your pregnancy, it will allow us an important opportunity to examine the relationship between early life factors and mid-childhood brain development.
We have secured funding from the National Health and Medical Research Council (NHMRC) to invite all our twins who are turning 11 years old for a session of cognitive assessment.
An experience clinical neuropsychologist and families administered these assessments. For twins that are of the same sex, they are being invited for a brain scan using Magnetic Resonance Imaging (MRI).
Recruitment is scheduled to go on for 2.5 years (July 2018 till December 2020) and so far we have seen close to 40 families. If your twins have turned 11 and have not heard from us, please contact us as soon as possible, so that you do not miss out on this opportunity to take part in this exciting phase of the study.
Teeth and tooth decay
An important part of the previous phase of the study (6 years old) was examining the children’s teeth. We did this to not only see whether there was any tooth decay (holes in teeth), but also to see how the teeth were developing compared to the child’s age, by looking at what teeth had become wobbly or fallen out and how many permanent (adult) teeth had grown.
We also looked for any developmental anomalies (marks) on the teeth that may have occurred before the teeth came into the mouth or soon after. In addition, we examined the health of the gums and collected biological samples (dental plaque) from along the gum line. We are also interested in finding out more about healthy mouths and how this affects other parts of the body and lifestyles.
We found the prevalence of tooth decay was like that of the broader population. Of the twins who had their teeth examined, there were 57% of twin pairs who had no signs of tooth decay. There were 23% who both had tooth decay. In 18% of twin pairs, only one twin had tooth decay.
This is of particular interest as these twins have the same parents, were in the womb at the same time and are generally exposed to similar environmental influences such as maternal diet and lifestyle. Studying twins enables us to look at the potential strength of genetic influences (comparing fraternal and identical twins with and without tooth decay) and environmental influences, such as diet and tooth brushing. We already know there are many factors that can contribute to the risk of tooth decay.
These are mostly environmental influences such as diet and tooth brushing. Frequent snacking, particularly of sugary foods, brushing less than twice a day can all have an adverse effect on oral health.
What is not really understood is why two individuals who may have similar environmental influences result in one having tooth decay and not the other. In addition, there are a range of other influences that we don’t know a lot about, such as genetics and general health.
Tooth plaque
To better understand these influences, we collected and sent just over 940 dental plaque samples to our collaborators in the USA along with some fairly general information such as whether the twins were identical or fraternal, the children’s ages at the time of the sample collection, whether there was any tooth decay, how often the children cleaned their teeth and consumed sweetened foods or liquids.
From these samples, we sought to establish whether there is an association between tooth decay and distinct plaque microbial communities in both MZ and DZ twins and how this might change with the severity of tooth decay. We were also interested in to what extent genetic background could explain the microbiome patterns that are associated with tooth decay (comparing DZ twin pairs and MZ twin pairs) or environmental influences (tooth brushing, diet, general health).
What we have found so far
Although dental plaque microbial communities are partly controlled by host genetic factors, the genetic contribution seems to be more related to a healthy state than a diseased one (tooth decay). Our data also shows that factors specific to individual twins have a strong influence on oral health. This could mean that it is important to focus on individuals to prevent tooth decay. We are all different and so are twins! However, further research is planned using these samples to learn more about the genetic and environmental influences on oral health and disease.
Dental anomalies on tooth enamel
Many parents asked about the white or yellow marks on their children’s teeth that did not disappear with tooth brushing. These dental anomalies have occurred when the outer layer (enamel) of the tooth is developing, usually well before the tooth appears in the mouth. In some circumstances, affected teeth may be more sensitive or more susceptible to tooth decay. There are lots of theories about how this may have occurred (illnesses and infections of either the mother or infant during tooth development). We are also very interested in these anomalies and learning more about why they occur. By studying twins, and using the information we have already collected from before the children were born up to the present time, we can look more closely at influences.
From the dental examinations, we could discover that anomalies on the second primary molar (the very back baby tooth) were experienced by 68 children. Of these, there were 16 twin pairs where both children were affected and 36 pairs where only one was affected. More than half of all children had over one tooth with these anomalies. Of the children with these marks, 48 were fraternal and 17 were identical. There were three children affected whose zygosity is unknown.
Publications
Novakovic B, Ryan J, Pereira N, Boughton B, Craig JM, Saffery R. Postnatal stability, tissue, and time specific effects of AHRR methylation change in response to maternal smoking in pregnancy. Epigenetics. 2014 Mar;9(3):377-86. doi: 10.4161/epi.27248. Epub 2013 Nov 22. PubMed PMID: 24270552; PubMed Central PMCID: PMC4053456.
Loke YJ, Galati JC, Morley R, Joo EJ, Novakovic B, Li X, Weinrich B, Carson N, Ollikainen M, Ng HK, Andronikos R, Aziz NK, Saffery R, Craig JM. Association of maternal and nutrient supply line factors with DNA methylation at the imprinted IGF2/H19 locus in multiple tissues of newborn twins. Epigenetics. 2013 Oct 1;8(10):1069-79. doi: 10.4161/epi.25908. Epub 2013 Aug 5. PubMed PMID: 23917818; PubMed Central PMCID: PMC3891688.
Martino D, Loke YJ, Gordon L, Ollikainen M, Cruickshank MN, Saffery R, Craig JM. Longitudinal, genome-scale analysis of DNA methylation in twins from birth to 18 months of age reveals rapid epigenetic change in early life and pair-specific effects of discordance. Genome Biol. 2013 May 22;14(5):R42. doi: 10.1186/gb-2013-14-5-r42. PubMed PMID: 23697701; PubMed Central PMCID: PMC4054827.
Loke YJ, Novakovic B, Ollikainen M, Wallace EM, Umstad MP, Permezel M, Morley R, Ponsonby AL, Gordon L, Galati JC, Saffery R, Craig JM. The Peri/postnatalEpigenetic Twins Study (PETS). Twin Res Hum Genet. 2013 Feb;16(1):13-20. doi:10.1017/thg.2012.114. Epub 2012 Nov 22. PubMed PMID: 23171547.
Joo JE, Novakovic B, Cruickshank M, Doyle LW, Craig JM, Saffery R. Human active X-specific DNA methylation events showing stability across time and tissues. Eur J Hum Genet. 2014 Dec;22(12):1376-81. doi: 10.1038/ejhg.2014.34. Epub 2014 Apr 9. PubMed PMID: 24713664; PubMed Central PMCID: PMC4231404.
Gordon L, Joo JE, Powell JE, Ollikainen M, Novakovic B, Li X, Andronikos R, Cruickshank MN, Conneely KN, Smith AK, Alisch RS, Morley R, Visscher PM, Craig JM, Saffery R. Neonatal DNA methylation profile in human twins is specified by a complex interplay between intrauterine environmental and genetic factors, subject to tissue-specific influence. Genome Res. 2012 Aug;22(8):1395-406. doi: 10.1101/gr.136598.111. Epub 2012 Jul 16. PubMed PMID: 22800725; PubMed Central PMCID: PMC3409253.
Novakovic B, Galati JC, Chen A, Morley R, Craig JM, Saffery R. Maternal vitamin D predominates over genetic factors in determining neonatal circulating vitamin D concentrations. Am J Clin Nutr. 2012 Jul;96(1):188-95. doi: 10.3945/ajcn.112.035683. Epub 2012 May 30. PubMed PMID: 22648713.
Saffery R, Morley R, Carlin JB, Joo JH, Ollikainen M, Novakovic B, Andronikos R, Li X, Loke YJ, Carson N, Wallace EM, Umstad MP, Permezel M, Galati JC, Craig JM. Cohort profile: The peri/post-natal epigenetic twins study. Int J Epidemiol. 2012 Feb;41(1):55-61. doi: 10.1093/ije/dyr140. Epub 2011 Oct 3. PubMed PMID: 22422448.
Gordon L, Joo JH, Andronikos R, Ollikainen M, Wallace EM, Umstad MP, Permezel M, Oshlack A, Morley R, Carlin JB, Saffery R, Smyth GK, Craig JM. Expression discordance of monozygotic twins at birth: effect of intrauterine environment and a possible mechanism for fetal programming. Epigenetics. 2011 May;6(5):579-92. Epub 2011 May 1. PubMed PMID: 21358273.
Ollikainen M, Smith KR, Joo EJ, Ng HK, Andronikos R, Novakovic B, Abdul Aziz NK, Carlin JB, Morley R, Saffery R, Craig JM. DNA methylation analysis of multiple tissues from newborn twins reveals both genetic and intrauterine components to variation in the human neonatal epigenome. Hum Mol Genet. 2010 Nov 1;19(21):4176-88. doi: 10.1093/hmg/ddq336. Epub 2010 Aug 10. PubMed PMID: 20699328.
Theda C, Hwang SH, Czajko A, Loke YJ, Leong P, Craig JM. Quantitation of the cellular content of saliva and buccal swab samples. Scientific reports 2018 May; 8(1): 6944. doi: 10.1038/s41598-018-25311-0. PubMed PMID: 29720614
Loke YJ, Galati JC, Saffery R, Craig JM. Association of in vitro fertilisation with global and IGF2/H19 methylation variation in newborn twins. J DOHaD 2015 Apr; 6(2): 115-24. doi: 10.1017/S2040174415000161. PubMed PMID: 25857739
Castillo-Fernandez JE, Loke YJ, Bass-Stringer S, Gao F, Xia Y, Wu H, Lu H, Liu Y, Wang J, Spector TD, Saffery R, Craig JM, Bell JT. DNA methylation changes at infertility genes in newborn twins conceived by in vitro fertilisation. Genome Med. 2017 Mar; 9(1): 28. doi: 10.1186/s13073-017-0413-5. PubMed PMID: 28340599
Temples HS, Willoughby D, Holaday B, Rogers CR, Wueste D, Bridges W, Saffery R, Craig JM. Breastfeeding and growth of children in the Peri/postnatal Epigenetic Twins Study (PETS): Theoretical epigenetic mechanisms. J Hum. Lact. 2016 Aug; 32(3):481-8. doi: 10.1177/0890334416637594. PubMed PMID: 27009979
Silva MJ, Kilpatrick NM, Craig JM, Manton DJ, Leong P, Burgner DP, Scurrah KJ. Genetic and early-life environmental influences on dental caries risk: A twin study. Pediatrics. 2019 May: 143(5). doi: 10.1542/peds.2018-3499.
Gomez A, Espinoza JL, Harkins DM, Leong P, Saffery R, Bockmann M, Torralba M, Kuelbs C, Kodukula R, Inman J, Hughes T, Craig JM, Highlander SK, Jones MB, Dupont CL, Nelson KE. Host genetic control of the oral microbiome in health and disease. Cell Host Microbe. 2017 September; 22(3). doi: 10.1016/j.chom.2017.08.013.
Silva M, Kilpatrick, Craig JM, Manton DJ, Leong P, Burgner D, Scurrah KJ. Etiology of hypomineralized second primary molars: A prospective twin study. J Dent. Res. 2019 January; 98(1): 77-83. doi: 10.1177/0022034518792870
Silva MJ, Kilpatrick NM, Craig JM, Manton DJ, Leong P, Ho H, Saffery R., Burgner DP, Scurrah KJ. A twin study of body mass index and dental caries in childhood. Nature Scientific Reports (2020) Jan 17: 10 (568) https://doi.org/10.1038/s41598-020-57435-7
Freire M, Moustafa A, Harkins DM, Torralba MG, Zhang Y, Leong P, Saffery R, Bockmann M, Kuelbs C, Hughes T, Craig JM, Nelson K. Longitudinal Study of Oral Microbiome Variation in Twins. Nature Scientific Reports 2020 May 14: 10 (7954) https://doi.org/10.1038/s41598-020-64747-1
Leong P, Loke YJ, Saffery R, Silk T, Burnett A, Josev E, Scurrah K, Theda C, Czajko A, Pua EP, Seal ML, Craig JM. Epigenetic influences on neurodevelopmental at 11 years of age: Protocol for the longitudinal peri/postnatal epigenetic twins study at 11 years of age (PETS @ 11). Twins Res. Hum. Genet. 2020 Feb. doi: 10.1017/thg.2019.120
Ashtree DN, Silva MJ, Sun C, Craig JM, Scurrah KJ. Birthweight-for-gestational-age z-scores are associated with early childhood cardiometabolic health in the Peri/Postnatal Epigenetic Twin Study. J Dev Orig Health Dis. 2021 Aug 23;1-9. doi: 10.1017/S2040174421000465.
Silva MJ, Zheng Y, Zaloumis S., Burgner DP, Craig JM, Manton DJ, Kilpatrick NM, Scurrah KJ Utilising surface-level data to explore surface, tooth, individual and family influence on the aetiology of hypomineralised second primary molars. J Dentistry 2021 October https://doi.org/10.1016/j.jdent.2021.103797
Contact us
PETS Study
Murdoch Children's Research Institute
The Royal Children's Hospital
50 Flemington Road
Parkville VIC 3052
Australia
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